GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_46257633D Traes_3B_46257633D	ta_iwgsc_3b_v1_10578376	17853	19210	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_46257633D.3 Traes_3B_46257633D.3 PAC:31840224	Low	No	920		Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -28.022 AMFE: -0.659 GC content %: 42.500
Taestivum_Traes_3B_46257633D.4 Traes_3B_46257633D.4 PAC:31840225	Low	No	815		Get ORF Coding potential... Type: noncoding Potential: -0.645 Folding energies... MFEI: -27.460 AMFE: -0.654 GC content %: 41.963

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).