GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_47B9A5BE5 Traes_3B_47B9A5BE5	ta_iwgsc_3b_v1_6250447	46	2642	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_47B9A5BE5.1 Traes_3B_47B9A5BE5.1 PAC:31859538	High	No	1225		Get ORF Coding potential... Type: noncoding Potential: -0.445 Folding energies... MFEI: -30.824 AMFE: -0.671 GC content %: 45.959
Taestivum_Traes_3B_47B9A5BE5.2 Traes_3B_47B9A5BE5.2 PAC:31859537	High	No	775		Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -33.355 AMFE: -0.668 GC content %: 49.935
Taestivum_Traes_3B_47B9A5BE5.3 Traes_3B_47B9A5BE5.3 PAC:31859539	High	No	521		Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -31.670 AMFE: -0.579 GC content %: 54.702
Taestivum_Traes_3B_47B9A5BE5.4 Traes_3B_47B9A5BE5.4 PAC:31859540	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.504 Folding energies... MFEI: -31.242 AMFE: -0.607 GC content %: 51.510

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).