GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_58E9F695E Traes_3B_58E9F695E	ta_iwgsc_3b_v1_10758494	608	2380	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_58E9F695E.1 Traes_3B_58E9F695E.1 PAC:31817942	Low	No	483		Get ORF Coding potential... Type: noncoding Potential: -0.153 Folding energies... MFEI: -30.704 AMFE: -0.579 GC content %: 53.002
Taestivum_Traes_3B_58E9F695E.2 Traes_3B_58E9F695E.2 PAC:31817940	Low	No	376		Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -32.660 AMFE: -0.588 GC content %: 55.585
Taestivum_Traes_3B_58E9F695E.3 Traes_3B_58E9F695E.3 PAC:31817941	Low	No	1679		Get ORF Coding potential... Type: noncoding Potential: -0.221 Folding energies... MFEI: -25.655 AMFE: -0.626 GC content %: 40.977

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).