GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_5ADBF0AFD Traes_3B_5ADBF0AFD	ta_iwgsc_3b_v1_10761537	1353	4546	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_5ADBF0AFD.2 Traes_3B_5ADBF0AFD.2 PAC:31942288	High	No	605		Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -34.231 AMFE: -0.628 GC content %: 54.545
Taestivum_Traes_3B_5ADBF0AFD.3 Traes_3B_5ADBF0AFD.3 PAC:31942290	High	No	671		Get ORF Coding potential... Type: noncoding Potential: -0.460 Folding energies... MFEI: -34.188 AMFE: -0.617 GC content %: 55.440
Taestivum_Traes_3B_5ADBF0AFD.4 Traes_3B_5ADBF0AFD.4 PAC:31942289	Low	No	452		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -32.434 AMFE: -0.471 GC content %: 68.805

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).