GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_5EFB9A61F Traes_3B_5EFB9A61F	ta_iwgsc_3b_v1_4206861	1095	3821	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_5EFB9A61F.1 Traes_3B_5EFB9A61F.1 PAC:31990918	High	No	1399		Get ORF Coding potential... Type: noncoding Potential: -1.212 Folding energies... MFEI: -29.407 AMFE: -0.693 GC content %: 42.459
Taestivum_Traes_3B_5EFB9A61F.2 Traes_3B_5EFB9A61F.2 PAC:31990917	High	No	2018		Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -25.986 AMFE: -0.652 GC content %: 39.841

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).