GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_63D51F3D9 Traes_3B_63D51F3D9	ta_iwgsc_3b_v1_10761096	6133	16035	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_63D51F3D9.3 Traes_3B_63D51F3D9.3 PAC:31891060	High	No	351		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -31.538 AMFE: -0.580 GC content %: 54.416
Taestivum_Traes_3B_63D51F3D9.4 Traes_3B_63D51F3D9.4 PAC:31891061	High	No	804		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -30.460 AMFE: -0.626 GC content %: 48.632

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).