Gene
Taestivum Traes 3B 765C5424B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_765C5424B Traes_3B_765C5424B |
ta_iwgsc_3b_v1_10530321 | 986 | 7477 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_765C5424B.1 Traes_3B_765C5424B.1 PAC:31928931 |
High | No | 324 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -36.173 AMFE: -0.555 GC content %: 65.123 | |
| Taestivum_Traes_3B_765C5424B.13 Traes_3B_765C5424B.13 PAC:31928929 |
High | No | 1513 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -25.598 AMFE: -0.631 GC content %: 40.582 | |
| Taestivum_Traes_3B_765C5424B.14 Traes_3B_765C5424B.14 PAC:31928932 |
High | No | 1711 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -31.473 AMFE: -0.644 GC content %: 48.860 | |
| Taestivum_Traes_3B_765C5424B.15 Traes_3B_765C5424B.15 PAC:31928933 |
High | No | 711 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -32.391 AMFE: -0.595 GC content %: 54.430 | |
| Taestivum_Traes_3B_765C5424B.16 Traes_3B_765C5424B.16 PAC:31928935 |
High | No | 1681 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -31.029 AMFE: -0.636 GC content %: 48.780 | |
| Taestivum_Traes_3B_765C5424B.17 Traes_3B_765C5424B.17 PAC:31928937 |
High | No | 2426 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -29.266 AMFE: -0.643 GC content %: 45.548 | |
| Taestivum_Traes_3B_765C5424B.18 Traes_3B_765C5424B.18 PAC:31928936 |
High | No | 3726 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -27.794 AMFE: -0.648 GC content %: 42.888 | |
| Taestivum_Traes_3B_765C5424B.19 Traes_3B_765C5424B.19 PAC:31928934 |
High | No | 2996 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -27.827 AMFE: -0.637 GC content %: 43.658 | |
| Taestivum_Traes_3B_765C5424B.2 Traes_3B_765C5424B.2 PAC:31928918 |
High | No | 1791 | Get ORF Coding potential... Type: noncoding Potential: -1.014 Folding energies... MFEI: -31.223 AMFE: -0.642 GC content %: 48.632 | |
| Taestivum_Traes_3B_765C5424B.20 Traes_3B_765C5424B.20 PAC:31928938 |
High | No | 3051 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -29.004 AMFE: -0.656 GC content %: 44.215 | |
| Taestivum_Traes_3B_765C5424B.21 Traes_3B_765C5424B.21 PAC:31928939 |
High | No | 1667 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -31.248 AMFE: -0.638 GC content %: 48.950 | |
| Taestivum_Traes_3B_765C5424B.22 Traes_3B_765C5424B.22 PAC:31928940 |
High | No | 1658 | Get ORF Coding potential... Type: noncoding Potential: -0.725 Folding energies... MFEI: -31.116 AMFE: -0.635 GC content %: 48.975 | |
| Taestivum_Traes_3B_765C5424B.23 Traes_3B_765C5424B.23 PAC:31928941 |
High | No | 1251 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -29.536 AMFE: -0.677 GC content %: 43.645 | |
| Taestivum_Traes_3B_765C5424B.24 Traes_3B_765C5424B.24 PAC:31928942 |
High | No | 2967 | Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -27.870 AMFE: -0.640 GC content %: 43.546 | |
| Taestivum_Traes_3B_765C5424B.25 Traes_3B_765C5424B.25 PAC:31928943 |
High | No | 2661 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -27.523 AMFE: -0.673 GC content %: 40.924 | |
| Taestivum_Traes_3B_765C5424B.26 Traes_3B_765C5424B.26 PAC:31928944 |
High | No | 1759 | Get ORF Coding potential... Type: noncoding Potential: -1.078 Folding energies... MFEI: -31.649 AMFE: -0.655 GC content %: 48.323 | |
| Taestivum_Traes_3B_765C5424B.27 Traes_3B_765C5424B.27 PAC:31928946 |
High | No | 1236 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -29.377 AMFE: -0.669 GC content %: 43.932 | |
| Taestivum_Traes_3B_765C5424B.28 Traes_3B_765C5424B.28 PAC:31928945 |
High | No | 2016 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -26.538 AMFE: -0.646 GC content %: 41.071 | |
| Taestivum_Traes_3B_765C5424B.29 Traes_3B_765C5424B.29 PAC:31928947 |
High | No | 1197 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -28.162 AMFE: -0.653 GC content %: 43.108 | |
| Taestivum_Traes_3B_765C5424B.3 Traes_3B_765C5424B.3 PAC:31928920 |
High | No | 2675 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -27.630 AMFE: -0.671 GC content %: 41.159 | |
| Taestivum_Traes_3B_765C5424B.30 Traes_3B_765C5424B.30 PAC:31928930 |
High | No | 2075 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -24.699 AMFE: -0.630 GC content %: 39.229 | |
| Taestivum_Traes_3B_765C5424B.4 Traes_3B_765C5424B.4 PAC:31928919 |
High | No | 3023 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -29.199 AMFE: -0.655 GC content %: 44.558 | |
| Taestivum_Traes_3B_765C5424B.5 Traes_3B_765C5424B.5 PAC:31928921 |
High | No | 1775 | Get ORF Coding potential... Type: noncoding Potential: -1.027 Folding energies... MFEI: -31.386 AMFE: -0.644 GC content %: 48.732 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
