Gene
Taestivum Traes 3B 862C6F386
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_862C6F386 Traes_3B_862C6F386 |
ta_iwgsc_3b_v1_10499887 | 11006 | 14488 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_862C6F386.1 Traes_3B_862C6F386.1 PAC:31771171 |
Low | No | 938 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -35.896 AMFE: -0.655 GC content %: 54.797 | |
| Taestivum_Traes_3B_862C6F386.2 Traes_3B_862C6F386.2 PAC:31771169 |
Low | No | 1561 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -29.885 AMFE: -0.633 GC content %: 47.213 | |
| Taestivum_Traes_3B_862C6F386.3 Traes_3B_862C6F386.3 PAC:31771170 |
Low | No | 821 | Get ORF Coding potential... Type: noncoding Potential: -0.702 Folding energies... MFEI: -38.258 AMFE: -0.660 GC content %: 57.978 | |
| Taestivum_Traes_3B_862C6F386.4 Traes_3B_862C6F386.4 PAC:31771172 |
Low | No | 2342 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -28.911 AMFE: -0.666 GC content %: 43.382 | |
| Taestivum_Traes_3B_862C6F386.5 Traes_3B_862C6F386.5 PAC:31771174 |
Low | No | 817 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -38.176 AMFE: -0.658 GC content %: 58.017 | |
| Taestivum_Traes_3B_862C6F386.6 Traes_3B_862C6F386.6 PAC:31771176 |
Low | No | 1602 | Get ORF Coding potential... Type: noncoding Potential: -1.003 Folding energies... MFEI: -32.853 AMFE: -0.697 GC content %: 47.129 | |
| Taestivum_Traes_3B_862C6F386.7 Traes_3B_862C6F386.7 PAC:31771175 |
Low | No | 1554 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -29.241 AMFE: -0.621 GC content %: 47.104 | |
| Taestivum_Traes_3B_862C6F386.8 Traes_3B_862C6F386.8 PAC:31771173 |
Low | No | 916 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -36.146 AMFE: -0.660 GC content %: 54.803 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_3B_862C6F386.4 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N2_TA | |
| Taestivum_Traes_3B_862C6F386.6 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-N2_TA |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
