Gene
Taestivum Traes 3B 8B2718F25
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_8B2718F25 Traes_3B_8B2718F25 |
ta_iwgsc_3b_v1_10547801 | 4 | 4799 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_8B2718F25.15 Traes_3B_8B2718F25.15 PAC:31847009 |
High | No | 1394 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -30.839 AMFE: -0.674 GC content %: 45.768 | |
| Taestivum_Traes_3B_8B2718F25.16 Traes_3B_8B2718F25.16 PAC:31847010 |
High | No | 1799 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -28.683 AMFE: -0.650 GC content %: 44.136 | |
| Taestivum_Traes_3B_8B2718F25.17 Traes_3B_8B2718F25.17 PAC:31847011 |
High | No | 729 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -27.078 AMFE: -0.649 GC content %: 41.701 | |
| Taestivum_Traes_3B_8B2718F25.5 Traes_3B_8B2718F25.5 PAC:31846999 |
High | No | 1305 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -31.310 AMFE: -0.679 GC content %: 46.130 | |
| Taestivum_Traes_3B_8B2718F25.6 Traes_3B_8B2718F25.6 PAC:31847000 |
High | No | 1143 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -30.525 AMFE: -0.665 GC content %: 45.932 | |
| Taestivum_Traes_3B_8B2718F25.7 Traes_3B_8B2718F25.7 PAC:31847001 |
High | No | 733 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -27.285 AMFE: -0.654 GC content %: 41.746 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
