Gene
Taestivum Traes 3B 8C5392693
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_8C5392693 Traes_3B_8C5392693 |
ta_iwgsc_3b_v1_10651523 | 5650 | 11411 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_8C5392693.4 Traes_3B_8C5392693.4 PAC:31950299 |
Low | No | 1326 | Get ORF Coding potential... Type: noncoding Potential: -0.689 Folding energies... MFEI: -23.688 AMFE: -0.589 GC content %: 40.196 | |
| Taestivum_Traes_3B_8C5392693.5 Traes_3B_8C5392693.5 PAC:31950301 |
Low | No | 2903 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -24.936 AMFE: -0.649 GC content %: 38.409 | |
| Taestivum_Traes_3B_8C5392693.6 Traes_3B_8C5392693.6 PAC:31950300 |
Low | No | 2579 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -25.048 AMFE: -0.645 GC content %: 38.852 | |
| Taestivum_Traes_3B_8C5392693.7 Traes_3B_8C5392693.7 PAC:31950302 |
Low | No | 2405 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -24.827 AMFE: -0.635 GC content %: 39.127 | |
| Taestivum_Traes_3B_8C5392693.8 Traes_3B_8C5392693.8 PAC:31950303 |
Low | No | 3449 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -25.526 AMFE: -0.651 GC content %: 39.229 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
