Gene
Taestivum Traes 3B 92B9820BD
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_92B9820BD Traes_3B_92B9820BD |
ta_iwgsc_3b_v1_10492927 | 4296 | 9830 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_92B9820BD.1 Traes_3B_92B9820BD.1 PAC:31950657 |
High | No | 1521 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -29.119 AMFE: -0.662 GC content %: 43.984 | |
| Taestivum_Traes_3B_92B9820BD.10 Traes_3B_92B9820BD.10 PAC:31950636 |
High | No | 2915 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -29.911 AMFE: -0.651 GC content %: 45.935 | |
| Taestivum_Traes_3B_92B9820BD.11 Traes_3B_92B9820BD.11 PAC:31950637 |
High | No | 1701 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -31.911 AMFE: -0.627 GC content %: 50.911 | |
| Taestivum_Traes_3B_92B9820BD.12 Traes_3B_92B9820BD.12 PAC:31950638 |
High | No | 2949 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -30.000 AMFE: -0.655 GC content %: 45.812 | |
| Taestivum_Traes_3B_92B9820BD.13 Traes_3B_92B9820BD.13 PAC:31950639 |
High | No | 1438 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -32.330 AMFE: -0.625 GC content %: 51.739 | |
| Taestivum_Traes_3B_92B9820BD.14 Traes_3B_92B9820BD.14 PAC:31950640 |
High | No | 1542 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -30.642 AMFE: -0.634 GC content %: 48.314 | |
| Taestivum_Traes_3B_92B9820BD.15 Traes_3B_92B9820BD.15 PAC:31950641 |
High | No | 1625 | Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -31.557 AMFE: -0.618 GC content %: 51.077 | |
| Taestivum_Traes_3B_92B9820BD.16 Traes_3B_92B9820BD.16 PAC:31950642 |
High | No | 2677 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -29.985 AMFE: -0.647 GC content %: 46.358 | |
| Taestivum_Traes_3B_92B9820BD.17 Traes_3B_92B9820BD.17 PAC:31950644 |
High | No | 1631 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -31.680 AMFE: -0.626 GC content %: 50.582 | |
| Taestivum_Traes_3B_92B9820BD.18 Traes_3B_92B9820BD.18 PAC:31950643 |
High | No | 1553 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -31.803 AMFE: -0.623 GC content %: 51.062 | |
| Taestivum_Traes_3B_92B9820BD.19 Traes_3B_92B9820BD.19 PAC:31950645 |
High | No | 1676 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -31.832 AMFE: -0.628 GC content %: 50.716 | |
| Taestivum_Traes_3B_92B9820BD.2 Traes_3B_92B9820BD.2 PAC:31950628 |
High | No | 1827 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -31.888 AMFE: -0.633 GC content %: 50.356 | |
| Taestivum_Traes_3B_92B9820BD.20 Traes_3B_92B9820BD.20 PAC:31950646 |
High | No | 1274 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -28.422 AMFE: -0.588 GC content %: 48.352 | |
| Taestivum_Traes_3B_92B9820BD.21 Traes_3B_92B9820BD.21 PAC:31950649 |
High | No | 2273 | Get ORF Coding potential... Type: noncoding Potential: -1.085 Folding energies... MFEI: -29.982 AMFE: -0.634 GC content %: 47.294 | |
| Taestivum_Traes_3B_92B9820BD.22 Traes_3B_92B9820BD.22 PAC:31950648 |
High | No | 1920 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -29.859 AMFE: -0.617 GC content %: 48.385 | |
| Taestivum_Traes_3B_92B9820BD.23 Traes_3B_92B9820BD.23 PAC:31950651 |
High | No | 1870 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -29.973 AMFE: -0.616 GC content %: 48.663 | |
| Taestivum_Traes_3B_92B9820BD.24 Traes_3B_92B9820BD.24 PAC:31950652 |
High | No | 1616 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -31.634 AMFE: -0.630 GC content %: 50.248 | |
| Taestivum_Traes_3B_92B9820BD.25 Traes_3B_92B9820BD.25 PAC:31950647 |
High | No | 2820 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -29.631 AMFE: -0.656 GC content %: 45.177 | |
| Taestivum_Traes_3B_92B9820BD.26 Traes_3B_92B9820BD.26 PAC:31950650 |
High | No | 1603 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -31.915 AMFE: -0.622 GC content %: 51.341 | |
| Taestivum_Traes_3B_92B9820BD.27 Traes_3B_92B9820BD.27 PAC:31950654 |
High | No | 2944 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -29.946 AMFE: -0.652 GC content %: 45.924 | |
| Taestivum_Traes_3B_92B9820BD.28 Traes_3B_92B9820BD.28 PAC:31950653 |
High | No | 1759 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -29.522 AMFE: -0.673 GC content %: 43.889 | |
| Taestivum_Traes_3B_92B9820BD.29 Traes_3B_92B9820BD.29 PAC:31950655 |
High | No | 1390 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -29.504 AMFE: -0.638 GC content %: 46.259 | |
| Taestivum_Traes_3B_92B9820BD.3 Traes_3B_92B9820BD.3 PAC:31950629 |
High | No | 3027 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -30.000 AMFE: -0.656 GC content %: 45.722 | |
| Taestivum_Traes_3B_92B9820BD.30 Traes_3B_92B9820BD.30 PAC:31950656 |
High | No | 1614 | Get ORF Coding potential... Type: noncoding Potential: -1.252 Folding energies... MFEI: -30.502 AMFE: -0.634 GC content %: 48.141 | |
| Taestivum_Traes_3B_92B9820BD.31 Traes_3B_92B9820BD.31 PAC:31950659 |
High | No | 1176 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -27.857 AMFE: -0.625 GC content %: 44.558 | |
| Taestivum_Traes_3B_92B9820BD.32 Traes_3B_92B9820BD.32 PAC:31950658 |
High | No | 1261 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -30.135 AMFE: -0.665 GC content %: 45.282 | |
| Taestivum_Traes_3B_92B9820BD.33 Traes_3B_92B9820BD.33 PAC:31950661 |
High | No | 1676 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -32.190 AMFE: -0.627 GC content %: 51.372 | |
| Taestivum_Traes_3B_92B9820BD.34 Traes_3B_92B9820BD.34 PAC:31950660 |
High | No | 1552 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -31.869 AMFE: -0.631 GC content %: 50.515 | |
| Taestivum_Traes_3B_92B9820BD.35 Traes_3B_92B9820BD.35 PAC:31950662 |
High | No | 1730 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -32.133 AMFE: -0.630 GC content %: 51.040 | |
| Taestivum_Traes_3B_92B9820BD.4 Traes_3B_92B9820BD.4 PAC:31950630 |
High | No | 1501 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -32.119 AMFE: -0.627 GC content %: 51.233 | |
| Taestivum_Traes_3B_92B9820BD.5 Traes_3B_92B9820BD.5 PAC:31950631 |
High | No | 1458 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -31.468 AMFE: -0.611 GC content %: 51.509 | |
| Taestivum_Traes_3B_92B9820BD.6 Traes_3B_92B9820BD.6 PAC:31950632 |
High | No | 1667 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -31.830 AMFE: -0.632 GC content %: 50.330 | |
| Taestivum_Traes_3B_92B9820BD.7 Traes_3B_92B9820BD.7 PAC:31950633 |
High | No | 1367 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -31.829 AMFE: -0.615 GC content %: 51.719 | |
| Taestivum_Traes_3B_92B9820BD.8 Traes_3B_92B9820BD.8 PAC:31950634 |
High | No | 1643 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -31.759 AMFE: -0.634 GC content %: 50.091 | |
| Taestivum_Traes_3B_92B9820BD.9 Traes_3B_92B9820BD.9 PAC:31950635 |
High | No | 1688 | Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -31.795 AMFE: -0.620 GC content %: 51.244 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
