GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_9351F541C Traes_3B_9351F541C	ta_iwgsc_3b_v1_440479	1	5473	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_9351F541C.1 Traes_3B_9351F541C.1 PAC:31771742	High	No	801		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -34.632 AMFE: -0.657 GC content %: 52.684
Taestivum_Traes_3B_9351F541C.2 Traes_3B_9351F541C.2 PAC:31771743	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -36.980 AMFE: -0.678 GC content %: 54.530
Taestivum_Traes_3B_9351F541C.3 Traes_3B_9351F541C.3 PAC:31771741	High	No	891		Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -33.805 AMFE: -0.665 GC content %: 50.842

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).