Gene
Taestivum Traes 3B 943B15BCA
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_943B15BCA Traes_3B_943B15BCA |
ta_iwgsc_3b_v1_10500449 | 3644 | 7428 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_943B15BCA.10 Traes_3B_943B15BCA.10 PAC:31882818 |
Low | No | 2184 | Get ORF Coding potential... Type: noncoding Potential: -0.044 Folding energies... MFEI: -28.127 AMFE: -0.651 GC content %: 43.223 | |
| Taestivum_Traes_3B_943B15BCA.11 Traes_3B_943B15BCA.11 PAC:31882819 |
Low | No | 1081 | Get ORF Coding potential... Type: noncoding Potential: -0.244 Folding energies... MFEI: -25.245 AMFE: -0.632 GC content %: 39.963 | |
| Taestivum_Traes_3B_943B15BCA.16 Traes_3B_943B15BCA.16 PAC:31882825 |
Low | No | 725 | Get ORF Coding potential... Type: noncoding Potential: -0.315 Folding energies... MFEI: -25.531 AMFE: -0.643 GC content %: 39.724 | |
| Taestivum_Traes_3B_943B15BCA.2 Traes_3B_943B15BCA.2 PAC:31882810 |
Low | No | 1277 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -29.021 AMFE: -0.612 GC content %: 47.455 | |
| Taestivum_Traes_3B_943B15BCA.20 Traes_3B_943B15BCA.20 PAC:31882829 |
Low | No | 646 | Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -23.793 AMFE: -0.596 GC content %: 39.938 | |
| Taestivum_Traes_3B_943B15BCA.23 Traes_3B_943B15BCA.23 PAC:31882822 |
Low | No | 1242 | Get ORF Coding potential... Type: noncoding Potential: -0.176 Folding energies... MFEI: -24.863 AMFE: -0.651 GC content %: 38.164 | |
| Taestivum_Traes_3B_943B15BCA.24 Traes_3B_943B15BCA.24 PAC:31882832 |
High | No | 784 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -22.883 AMFE: -0.621 GC content %: 36.862 | |
| Taestivum_Traes_3B_943B15BCA.4 Traes_3B_943B15BCA.4 PAC:31882813 |
Low | No | 1005 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -31.065 AMFE: -0.604 GC content %: 51.443 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
