GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_9FEA5A926 Traes_3B_9FEA5A926	ta_iwgsc_3b_v1_10637421	8895	11235	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_9FEA5A926.2 Traes_3B_9FEA5A926.2 PAC:31857215	High	No	902		Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -33.747 AMFE: -0.670 GC content %: 50.333
Taestivum_Traes_3B_9FEA5A926.3 Traes_3B_9FEA5A926.3 PAC:31857216	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -28.641 AMFE: -0.644 GC content %: 44.463

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).