GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_A46A26C62 Traes_3B_A46A26C62	ta_iwgsc_3b_v1_1906753	1	5018	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_A46A26C62.3 Traes_3B_A46A26C62.3 PAC:31867931	High	No	238		Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -23.992 AMFE: -0.571 GC content %: 42.017
Taestivum_Traes_3B_A46A26C62.4 Traes_3B_A46A26C62.4 PAC:31867932	High	No	300		Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -25.367 AMFE: -0.482 GC content %: 52.667

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).