GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_A5EC14904 Traes_3B_A5EC14904	ta_iwgsc_3b_v1_10762859	372	2766	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_A5EC14904.1 Traes_3B_A5EC14904.1 PAC:31869883	Low	No	1131		Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -28.400 AMFE: -0.516 GC content %: 55.084
Taestivum_Traes_3B_A5EC14904.2 Traes_3B_A5EC14904.2 PAC:31869884	Low	No	1300		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -27.338 AMFE: -0.520 GC content %: 52.538
Taestivum_Traes_3B_A5EC14904.3 Traes_3B_A5EC14904.3 PAC:31869885	Low	No	1166		Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -29.520 AMFE: -0.535 GC content %: 55.146
Taestivum_Traes_3B_A5EC14904.4 Traes_3B_A5EC14904.4 PAC:31869886	Low	No	1094		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -28.090 AMFE: -0.508 GC content %: 55.302

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).