GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_C970B4423 Traes_3B_C970B4423	ta_iwgsc_3b_v1_10438051	1	360	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_C970B4423.1 Traes_3B_C970B4423.1 PAC:31871295	Low	No	247		Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -47.733 AMFE: -0.678 GC content %: 70.445
Taestivum_Traes_3B_C970B4423.2 Traes_3B_C970B4423.2 PAC:31871296	Low	No	352		Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -40.483 AMFE: -0.609 GC content %: 66.477

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).