GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_CCD96A751 Traes_3B_CCD96A751	ta_iwgsc_3b_v1_10774300	7384	16137	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_CCD96A751.1 Traes_3B_CCD96A751.1 PAC:31915875	High	No	1753		Get ORF Coding potential... Type: noncoding Potential: -0.490 Folding energies... MFEI: -29.441 AMFE: -0.590 GC content %: 49.914
Taestivum_Traes_3B_CCD96A751.27 Traes_3B_CCD96A751.27 PAC:31915874	High	No	666		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -32.748 AMFE: -0.621 GC content %: 52.703

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).