GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_D79AEA2BF Traes_3B_D79AEA2BF	ta_iwgsc_3b_v1_10433602	3065	7690	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_D79AEA2BF.1 Traes_3B_D79AEA2BF.1 PAC:31950580	High	No	792		Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -26.566 AMFE: -0.636 GC content %: 41.793
Taestivum_Traes_3B_D79AEA2BF.2 Traes_3B_D79AEA2BF.2 PAC:31950581	High	No	894		Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -25.380 AMFE: -0.620 GC content %: 40.940
Taestivum_Traes_3B_D79AEA2BF.3 Traes_3B_D79AEA2BF.3 PAC:31950582	High	No	1356		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -24.086 AMFE: -0.634 GC content %: 37.979

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).