GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_DBBFDF11B Traes_3B_DBBFDF11B	ta_iwgsc_3b_v1_10761919	51	1198	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_DBBFDF11B.1 Traes_3B_DBBFDF11B.1 PAC:31857586	Low	No	432		Get ORF Coding potential... Type: noncoding Potential: -0.533 Folding energies... MFEI: -26.319 AMFE: -0.586 GC content %: 44.907
Taestivum_Traes_3B_DBBFDF11B.2 Traes_3B_DBBFDF11B.2 PAC:31857587	Low	No	546		Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -27.930 AMFE: -0.615 GC content %: 45.421

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).