GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3B_F4B716F7D Traes_3B_F4B716F7D	ta_iwgsc_3b_v1_10764386	4005	4759	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3B_F4B716F7D.1 Traes_3B_F4B716F7D.1 PAC:31768778	High	No	755		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -34.358 AMFE: -0.610 GC content %: 56.291
Taestivum_Traes_3B_F4B716F7D.2 Traes_3B_F4B716F7D.2 PAC:31768777	High	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -42.740 AMFE: -0.637 GC content %: 67.123

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).