Gene
Taestivum Traes 3B F56F87D73
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3B_F56F87D73 Traes_3B_F56F87D73 |
ta_iwgsc_3b_v1_10758841 | 1502 | 7001 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3B_F56F87D73.10 Traes_3B_F56F87D73.10 PAC:31952098 |
Low | No | 1506 | Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -27.789 AMFE: -0.662 GC content %: 41.965 | |
| Taestivum_Traes_3B_F56F87D73.11 Traes_3B_F56F87D73.11 PAC:31952099 |
Low | No | 2167 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -25.842 AMFE: -0.636 GC content %: 40.609 | |
| Taestivum_Traes_3B_F56F87D73.12 Traes_3B_F56F87D73.12 PAC:31952100 |
Low | No | 1241 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -28.550 AMFE: -0.667 GC content %: 42.788 | |
| Taestivum_Traes_3B_F56F87D73.13 Traes_3B_F56F87D73.13 PAC:31952101 |
Low | No | 2498 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -25.805 AMFE: -0.641 GC content %: 40.272 | |
| Taestivum_Traes_3B_F56F87D73.14 Traes_3B_F56F87D73.14 PAC:31952102 |
Low | No | 1320 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -28.932 AMFE: -0.674 GC content %: 42.955 | |
| Taestivum_Traes_3B_F56F87D73.15 Traes_3B_F56F87D73.15 PAC:31952103 |
Low | No | 1366 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -27.877 AMFE: -0.662 GC content %: 42.094 | |
| Taestivum_Traes_3B_F56F87D73.4 Traes_3B_F56F87D73.4 PAC:31952092 |
Low | No | 1541 | Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -27.534 AMFE: -0.663 GC content %: 41.531 | |
| Taestivum_Traes_3B_F56F87D73.5 Traes_3B_F56F87D73.5 PAC:31952091 |
Low | No | 1008 | Get ORF Coding potential... Type: noncoding Potential: -0.025 Folding energies... MFEI: -27.659 AMFE: -0.659 GC content %: 41.964 | |
| Taestivum_Traes_3B_F56F87D73.7 Traes_3B_F56F87D73.7 PAC:31952095 |
Low | No | 1125 | Get ORF Coding potential... Type: noncoding Potential: -0.344 Folding energies... MFEI: -27.467 AMFE: -0.656 GC content %: 41.867 | |
| Taestivum_Traes_3B_F56F87D73.8 Traes_3B_F56F87D73.8 PAC:31952097 |
Low | No | 1284 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -28.910 AMFE: -0.675 GC content %: 42.835 | |
| Taestivum_Traes_3B_F56F87D73.9 Traes_3B_F56F87D73.9 PAC:31952096 |
Low | No | 1196 | Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -29.548 AMFE: -0.681 GC content %: 43.395 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
