Gene
Taestivum Traes 3DL 00066CA2B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_00066CA2B Traes_3DL_00066CA2B |
ta_iwgsc_3dl_v1_6844764 | 42 | 3578 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_00066CA2B.1 Traes_3DL_00066CA2B.1 PAC:31891315 |
Low | No | 3056 | Get ORF Coding potential... Type: noncoding Potential: -0.850 Folding energies... MFEI: -25.906 AMFE: -0.622 GC content %: 41.623 | |
| Taestivum_Traes_3DL_00066CA2B.2 Traes_3DL_00066CA2B.2 PAC:31891316 |
Low | No | 1096 | Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -26.022 AMFE: -0.590 GC content %: 44.069 | |
| Taestivum_Traes_3DL_00066CA2B.4 Traes_3DL_00066CA2B.4 PAC:31891318 |
Low | No | 2951 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -26.130 AMFE: -0.627 GC content %: 41.647 | |
| Taestivum_Traes_3DL_00066CA2B.5 Traes_3DL_00066CA2B.5 PAC:31891319 |
High | No | 1628 | Get ORF Coding potential... Type: noncoding Potential: -1.185 Folding energies... MFEI: -25.295 AMFE: -0.612 GC content %: 41.339 | |
| Taestivum_Traes_3DL_00066CA2B.6 Traes_3DL_00066CA2B.6 PAC:31891320 |
High | No | 1319 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -26.308 AMFE: -0.624 GC content %: 42.153 | |
| Taestivum_Traes_3DL_00066CA2B.7 Traes_3DL_00066CA2B.7 PAC:31891321 |
Low | No | 3073 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -26.668 AMFE: -0.634 GC content %: 42.044 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
