GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_1C4B05CA0 Traes_3DL_1C4B05CA0	ta_iwgsc_3dl_v1_6954973	3356	5452	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_1C4B05CA0.1 Traes_3DL_1C4B05CA0.1 PAC:31990840	Low	No	264		Get ORF Coding potential... Type: noncoding Potential: -0.708 Folding energies... MFEI: -23.485 AMFE: -0.508 GC content %: 46.212
Taestivum_Traes_3DL_1C4B05CA0.2 Traes_3DL_1C4B05CA0.2 PAC:31990839	Low	No	1597		Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -27.677 AMFE: -0.660 GC content %: 41.954
Taestivum_Traes_3DL_1C4B05CA0.3 Traes_3DL_1C4B05CA0.3 PAC:31990841	Low	No	709		Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -27.602 AMFE: -0.631 GC content %: 43.724

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).