Gene
Taestivum Traes 3DL 1D8777380
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_1D8777380 Traes_3DL_1D8777380 |
ta_iwgsc_3dl_v1_6898724 | 2045 | 5536 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_1D8777380.1 Traes_3DL_1D8777380.1 PAC:31930907 |
Low | No | 1496 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -28.336 AMFE: -0.650 GC content %: 43.583 | |
| Taestivum_Traes_3DL_1D8777380.3 Traes_3DL_1D8777380.3 PAC:31930902 |
Low | No | 759 | Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -30.408 AMFE: -0.634 GC content %: 47.958 | |
| Taestivum_Traes_3DL_1D8777380.4 Traes_3DL_1D8777380.4 PAC:31930905 |
Low | No | 1584 | Get ORF Coding potential... Type: noncoding Potential: -0.245 Folding energies... MFEI: -28.302 AMFE: -0.655 GC content %: 43.182 | |
| Taestivum_Traes_3DL_1D8777380.5 Traes_3DL_1D8777380.5 PAC:31930903 |
Low | No | 1602 | Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -28.471 AMFE: -0.655 GC content %: 43.446 | |
| Taestivum_Traes_3DL_1D8777380.6 Traes_3DL_1D8777380.6 PAC:31930904 |
Low | No | 1606 | Get ORF Coding potential... Type: noncoding Potential: -0.198 Folding energies... MFEI: -28.555 AMFE: -0.657 GC content %: 43.462 | |
| Taestivum_Traes_3DL_1D8777380.7 Traes_3DL_1D8777380.7 PAC:31930906 |
Low | No | 1662 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -27.810 AMFE: -0.653 GC content %: 42.599 | |
| Taestivum_Traes_3DL_1D8777380.8 Traes_3DL_1D8777380.8 PAC:31930908 |
Low | No | 1477 | Get ORF Coding potential... Type: noncoding Potential: -0.187 Folding energies... MFEI: -29.147 AMFE: -0.658 GC content %: 44.279 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
