GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_3FB6ABDC2 Traes_3DL_3FB6ABDC2	ta_iwgsc_3dl_v1_6951005	828	5488	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_3FB6ABDC2.2 Traes_3DL_3FB6ABDC2.2 PAC:31866802	High	No	574		Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -28.502 AMFE: -0.615 GC content %: 46.341
Taestivum_Traes_3DL_3FB6ABDC2.3 Traes_3DL_3FB6ABDC2.3 PAC:31866803	High	No	808		Get ORF Coding potential... Type: noncoding Potential: -0.622 Folding energies... MFEI: -29.257 AMFE: -0.651 GC content %: 44.926
Taestivum_Traes_3DL_3FB6ABDC2.4 Traes_3DL_3FB6ABDC2.4 PAC:31866804	High	No	968		Get ORF Coding potential... Type: noncoding Potential: -0.640 Folding energies... MFEI: -30.362 AMFE: -0.666 GC content %: 45.558
Taestivum_Traes_3DL_3FB6ABDC2.5 Traes_3DL_3FB6ABDC2.5 PAC:31866805	High	No	488		Get ORF Coding potential... Type: noncoding Potential: -0.705 Folding energies... MFEI: -28.811 AMFE: -0.617 GC content %: 46.721

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).