GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_494C2F6E3 Traes_3DL_494C2F6E3	ta_iwgsc_3dl_v1_6813478	4	1850	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_494C2F6E3.1 Traes_3DL_494C2F6E3.1 PAC:31960146	High	No	231		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -23.896 AMFE: -0.531 GC content %: 45.022
Taestivum_Traes_3DL_494C2F6E3.2 Traes_3DL_494C2F6E3.2 PAC:31960145	High	No	1364		Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -26.151 AMFE: -0.602 GC content %: 43.475
Taestivum_Traes_3DL_494C2F6E3.3 Traes_3DL_494C2F6E3.3 PAC:31960144	High	No	1281		Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -26.019 AMFE: -0.602 GC content %: 43.247

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).