GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_535E87816 Traes_3DL_535E87816	ta_iwgsc_3dl_v1_6809904	2	5505	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_535E87816.22 Traes_3DL_535E87816.22 PAC:31958899	Low	No	2384		Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -25.558 AMFE: -0.686 GC content %: 37.248
Taestivum_Traes_3DL_535E87816.54 Traes_3DL_535E87816.54 PAC:31958931	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.295 Folding energies... MFEI: -26.618 AMFE: -0.700 GC content %: 38.026

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).