GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_7EEFEE0B9 Traes_3DL_7EEFEE0B9	ta_iwgsc_3dl_v1_6897608	5667	8068	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_7EEFEE0B9.1 Traes_3DL_7EEFEE0B9.1 PAC:31921373	High	No	935		Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -34.845 AMFE: -0.677 GC content %: 51.444
Taestivum_Traes_3DL_7EEFEE0B9.2 Traes_3DL_7EEFEE0B9.2 PAC:31921375	High	No	750		Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -33.040 AMFE: -0.677 GC content %: 48.800
Taestivum_Traes_3DL_7EEFEE0B9.3 Traes_3DL_7EEFEE0B9.3 PAC:31921374	High	No	1158		Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -30.380 AMFE: -0.675 GC content %: 44.991
Taestivum_Traes_3DL_7EEFEE0B9.4 Traes_3DL_7EEFEE0B9.4 PAC:31921376	High	No	1227		Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -23.896 AMFE: -0.639 GC content %: 37.408

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).