GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_90537E8CA Traes_3DL_90537E8CA	ta_iwgsc_3dl_v1_6928453	185	858	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_90537E8CA.1 Traes_3DL_90537E8CA.1 PAC:31867337	Low	No	494		Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -24.879 AMFE: -0.640 GC content %: 38.866
Taestivum_Traes_3DL_90537E8CA.2 Traes_3DL_90537E8CA.2 PAC:31867338	Low	No	225		Get ORF Coding potential... Type: noncoding Potential: -0.032 Folding energies... MFEI: -26.133 AMFE: -0.594 GC content %: 44.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).