Gene
Taestivum Traes 3DL 977FE6D90
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_977FE6D90 Traes_3DL_977FE6D90 |
ta_iwgsc_3dl_v1_6892223 | 1035 | 3672 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_977FE6D90.10 Traes_3DL_977FE6D90.10 PAC:31944440 |
High | No | 893 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -29.541 AMFE: -0.655 GC content %: 45.129 | |
| Taestivum_Traes_3DL_977FE6D90.11 Traes_3DL_977FE6D90.11 PAC:31944441 |
High | No | 1354 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -28.597 AMFE: -0.677 GC content %: 42.245 | |
| Taestivum_Traes_3DL_977FE6D90.12 Traes_3DL_977FE6D90.12 PAC:31944442 |
High | No | 312 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -25.449 AMFE: -0.575 GC content %: 44.231 | |
| Taestivum_Traes_3DL_977FE6D90.3 Traes_3DL_977FE6D90.3 PAC:31944433 |
High | No | 526 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -29.106 AMFE: -0.627 GC content %: 46.388 | |
| Taestivum_Traes_3DL_977FE6D90.4 Traes_3DL_977FE6D90.4 PAC:31944434 |
High | No | 1358 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -28.675 AMFE: -0.678 GC content %: 42.268 | |
| Taestivum_Traes_3DL_977FE6D90.5 Traes_3DL_977FE6D90.5 PAC:31944435 |
High | No | 985 | Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -30.518 AMFE: -0.668 GC content %: 45.685 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
