GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_9E676F793 Traes_3DL_9E676F793	ta_iwgsc_3dl_v1_6866102	568	5270	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_9E676F793.10 Traes_3DL_9E676F793.10 PAC:31806063	High	No	990		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -26.444 AMFE: -0.656 GC content %: 40.303
Taestivum_Traes_3DL_9E676F793.8 Traes_3DL_9E676F793.8 PAC:31806061	High	No	1776		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -31.340 AMFE: -0.671 GC content %: 46.734
Taestivum_Traes_3DL_9E676F793.9 Traes_3DL_9E676F793.9 PAC:31806062	Low	No	1360		Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -30.706 AMFE: -0.640 GC content %: 48.015

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).