Gene

Taestivum Traes 3DL A0907056C

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Taestivum_Traes_3DL_A0907056C
Traes_3DL_A0907056C
ta_iwgsc_3dl_v1_6812023 1000 3424 Phytozome v2.2 Triticum_aestivum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Taestivum_Traes_3DL_A0907056C.1
Traes_3DL_A0907056C.1
PAC:31945584
High No 789
Coding potential...
Type: noncoding Potential: -1.227
Folding energies...
MFEI: -28.555 AMFE: -0.636
GC content
%: 44.867
Taestivum_Traes_3DL_A0907056C.2
Traes_3DL_A0907056C.2
PAC:31945587
High No 567
Coding potential...
Type: noncoding Potential: -1.214
Folding energies...
MFEI: -27.937 AMFE: -0.580
GC content
%: 48.148
Taestivum_Traes_3DL_A0907056C.3
Traes_3DL_A0907056C.3
PAC:31945586
High No 603
Coding potential...
Type: noncoding Potential: -1.239
Folding energies...
MFEI: -29.071 AMFE: -0.613
GC content
%: 47.430
Taestivum_Traes_3DL_A0907056C.4
Traes_3DL_A0907056C.4
PAC:31945585
High No 753
Coding potential...
Type: noncoding Potential: -1.290
Folding energies...
MFEI: -26.866 AMFE: -0.593
GC content
%: 45.286
Taestivum_Traes_3DL_A0907056C.5
Traes_3DL_A0907056C.5
PAC:31945588
High No 623
Coding potential...
Type: noncoding Potential: -1.242
Folding energies...
MFEI: -27.657 AMFE: -0.592
GC content
%: 46.709
Taestivum_Traes_3DL_A0907056C.6
Traes_3DL_A0907056C.6
PAC:31945589
High No 714
Coding potential...
Type: noncoding Potential: -1.283
Folding energies...
MFEI: -27.507 AMFE: -0.608
GC content
%: 45.238
Taestivum_Traes_3DL_A0907056C.7
Traes_3DL_A0907056C.7
PAC:31945590
High No 530
Coding potential...
Type: noncoding Potential: -1.223
Folding energies...
MFEI: -28.491 AMFE: -0.590
GC content
%: 48.302


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Traes_3DL_A0907056C.png