Gene
Taestivum Traes 3DL A0907056C
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_A0907056C Traes_3DL_A0907056C |
ta_iwgsc_3dl_v1_6812023 | 1000 | 3424 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_A0907056C.1 Traes_3DL_A0907056C.1 PAC:31945584 |
High | No | 789 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -28.555 AMFE: -0.636 GC content %: 44.867 | |
| Taestivum_Traes_3DL_A0907056C.2 Traes_3DL_A0907056C.2 PAC:31945587 |
High | No | 567 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -27.937 AMFE: -0.580 GC content %: 48.148 | |
| Taestivum_Traes_3DL_A0907056C.3 Traes_3DL_A0907056C.3 PAC:31945586 |
High | No | 603 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -29.071 AMFE: -0.613 GC content %: 47.430 | |
| Taestivum_Traes_3DL_A0907056C.4 Traes_3DL_A0907056C.4 PAC:31945585 |
High | No | 753 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -26.866 AMFE: -0.593 GC content %: 45.286 | |
| Taestivum_Traes_3DL_A0907056C.5 Traes_3DL_A0907056C.5 PAC:31945588 |
High | No | 623 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -27.657 AMFE: -0.592 GC content %: 46.709 | |
| Taestivum_Traes_3DL_A0907056C.6 Traes_3DL_A0907056C.6 PAC:31945589 |
High | No | 714 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -27.507 AMFE: -0.608 GC content %: 45.238 | |
| Taestivum_Traes_3DL_A0907056C.7 Traes_3DL_A0907056C.7 PAC:31945590 |
High | No | 530 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -28.491 AMFE: -0.590 GC content %: 48.302 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
