Gene
Taestivum Traes 3DL BBE6A3BEC
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_BBE6A3BEC Traes_3DL_BBE6A3BEC |
ta_iwgsc_3dl_v1_6937215 | 845 | 5973 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_BBE6A3BEC.1 Traes_3DL_BBE6A3BEC.1 PAC:31864856 |
Low | No | 1755 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -27.994 AMFE: -0.620 GC content %: 45.185 | |
| Taestivum_Traes_3DL_BBE6A3BEC.10 Traes_3DL_BBE6A3BEC.10 PAC:31864862 |
Low | No | 3109 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.459 AMFE: -0.643 GC content %: 42.683 | |
| Taestivum_Traes_3DL_BBE6A3BEC.11 Traes_3DL_BBE6A3BEC.11 PAC:31864865 |
Low | No | 1433 | Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -31.165 AMFE: -0.626 GC content %: 49.756 | |
| Taestivum_Traes_3DL_BBE6A3BEC.2 Traes_3DL_BBE6A3BEC.2 PAC:31864855 |
Low | No | 2713 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -27.888 AMFE: -0.641 GC content %: 43.494 | |
| Taestivum_Traes_3DL_BBE6A3BEC.3 Traes_3DL_BBE6A3BEC.3 PAC:31864857 |
Low | No | 1195 | Get ORF Coding potential... Type: noncoding Potential: -1.233 Folding energies... MFEI: -28.310 AMFE: -0.612 GC content %: 46.276 | |
| Taestivum_Traes_3DL_BBE6A3BEC.4 Traes_3DL_BBE6A3BEC.4 PAC:31864858 |
Low | No | 3210 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -27.801 AMFE: -0.640 GC content %: 43.427 | |
| Taestivum_Traes_3DL_BBE6A3BEC.5 Traes_3DL_BBE6A3BEC.5 PAC:31864859 |
Low | No | 1180 | Get ORF Coding potential... Type: noncoding Potential: -1.317 Folding energies... MFEI: -30.076 AMFE: -0.661 GC content %: 45.508 | |
| Taestivum_Traes_3DL_BBE6A3BEC.6 Traes_3DL_BBE6A3BEC.6 PAC:31864864 |
Low | No | 3370 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -27.513 AMFE: -0.642 GC content %: 42.849 | |
| Taestivum_Traes_3DL_BBE6A3BEC.7 Traes_3DL_BBE6A3BEC.7 PAC:31864861 |
Low | No | 2330 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -26.635 AMFE: -0.614 GC content %: 43.348 | |
| Taestivum_Traes_3DL_BBE6A3BEC.8 Traes_3DL_BBE6A3BEC.8 PAC:31864860 |
Low | No | 3050 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -27.702 AMFE: -0.642 GC content %: 43.148 | |
| Taestivum_Traes_3DL_BBE6A3BEC.9 Traes_3DL_BBE6A3BEC.9 PAC:31864863 |
Low | No | 3086 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.764 AMFE: -0.643 GC content %: 43.163 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_3DL_BBE6A3BEC.7 | RepBase (RepeatMasker) | 2014-01-31 | Helitron4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.2 | RepBase (RepeatMasker) | 2014-01-31 | HELMET3 | |
| Taestivum_Traes_3DL_BBE6A3BEC.8 | RepBase (RepeatMasker) | 2014-01-31 | Helitron4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.3 | RepBase (RepeatMasker) | 2014-01-31 | HELMET4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.9 | RepBase (RepeatMasker) | 2014-01-31 | Helitron4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.4 | RepBase (RepeatMasker) | 2014-01-31 | Helitron4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.1 | RepBase (RepeatMasker) | 2014-01-31 | HELMET3 | |
| Taestivum_Traes_3DL_BBE6A3BEC.5 | RepBase (RepeatMasker) | 2014-01-31 | HELMET4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.10 | RepBase (RepeatMasker) | 2014-01-31 | Helitron4 | |
| Taestivum_Traes_3DL_BBE6A3BEC.6 | RepBase (RepeatMasker) | 2014-01-31 | Helitron4 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
