Gene
Taestivum Traes 3DL BCBE7B2E2
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_BCBE7B2E2 Traes_3DL_BCBE7B2E2 |
ta_iwgsc_3dl_v1_6910473 | 2 | 6057 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_BCBE7B2E2.1 Traes_3DL_BCBE7B2E2.1 PAC:31888862 |
Low | No | 3520 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -27.991 AMFE: -0.662 GC content %: 42.273 | |
| Taestivum_Traes_3DL_BCBE7B2E2.10 Traes_3DL_BCBE7B2E2.10 PAC:31888876 |
Low | No | 1773 | Get ORF Coding potential... Type: noncoding Potential: -1.164 Folding energies... MFEI: -31.873 AMFE: -0.647 GC content %: 49.295 | |
| Taestivum_Traes_3DL_BCBE7B2E2.11 Traes_3DL_BCBE7B2E2.11 PAC:31888868 |
Low | No | 1963 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -31.513 AMFE: -0.657 GC content %: 47.988 | |
| Taestivum_Traes_3DL_BCBE7B2E2.12 Traes_3DL_BCBE7B2E2.12 PAC:31888873 |
Low | No | 4348 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -28.753 AMFE: -0.714 GC content %: 40.271 | |
| Taestivum_Traes_3DL_BCBE7B2E2.13 Traes_3DL_BCBE7B2E2.13 PAC:31888880 |
Low | No | 1795 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -31.933 AMFE: -0.652 GC content %: 48.969 | |
| Taestivum_Traes_3DL_BCBE7B2E2.14 Traes_3DL_BCBE7B2E2.14 PAC:31888867 |
Low | No | 3494 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -27.819 AMFE: -0.660 GC content %: 42.158 | |
| Taestivum_Traes_3DL_BCBE7B2E2.15 Traes_3DL_BCBE7B2E2.15 PAC:31888874 |
Low | No | 2376 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -28.519 AMFE: -0.650 GC content %: 43.897 | |
| Taestivum_Traes_3DL_BCBE7B2E2.16 Traes_3DL_BCBE7B2E2.16 PAC:31888882 |
Low | No | 1853 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -31.403 AMFE: -0.654 GC content %: 48.030 | |
| Taestivum_Traes_3DL_BCBE7B2E2.17 Traes_3DL_BCBE7B2E2.17 PAC:31888884 |
Low | No | 2011 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -30.850 AMFE: -0.650 GC content %: 47.439 | |
| Taestivum_Traes_3DL_BCBE7B2E2.18 Traes_3DL_BCBE7B2E2.18 PAC:31888865 |
Low | No | 1843 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -31.297 AMFE: -0.655 GC content %: 47.748 | |
| Taestivum_Traes_3DL_BCBE7B2E2.19 Traes_3DL_BCBE7B2E2.19 PAC:31888866 |
Low | No | 4697 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -28.252 AMFE: -0.707 GC content %: 39.983 | |
| Taestivum_Traes_3DL_BCBE7B2E2.2 Traes_3DL_BCBE7B2E2.2 PAC:31888863 |
Low | No | 4076 | Get ORF Coding potential... Type: noncoding Potential: -1.205 Folding energies... MFEI: -27.431 AMFE: -0.666 GC content %: 41.192 | |
| Taestivum_Traes_3DL_BCBE7B2E2.20 Traes_3DL_BCBE7B2E2.20 PAC:31888881 |
Low | No | 3617 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -28.095 AMFE: -0.666 GC content %: 42.190 | |
| Taestivum_Traes_3DL_BCBE7B2E2.21 Traes_3DL_BCBE7B2E2.21 PAC:31888879 |
Low | No | 3567 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -28.057 AMFE: -0.664 GC content %: 42.276 | |
| Taestivum_Traes_3DL_BCBE7B2E2.22 Traes_3DL_BCBE7B2E2.22 PAC:31888869 |
Low | No | 1777 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -32.122 AMFE: -0.650 GC content %: 49.409 | |
| Taestivum_Traes_3DL_BCBE7B2E2.23 Traes_3DL_BCBE7B2E2.23 PAC:31888870 |
Low | No | 1752 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -32.180 AMFE: -0.649 GC content %: 49.600 | |
| Taestivum_Traes_3DL_BCBE7B2E2.24 Traes_3DL_BCBE7B2E2.24 PAC:31888878 |
Low | No | 3812 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.741 AMFE: -0.662 GC content %: 41.920 | |
| Taestivum_Traes_3DL_BCBE7B2E2.25 Traes_3DL_BCBE7B2E2.25 PAC:31888883 |
Low | No | 1939 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -31.604 AMFE: -0.654 GC content %: 48.324 | |
| Taestivum_Traes_3DL_BCBE7B2E2.26 Traes_3DL_BCBE7B2E2.26 PAC:31888886 |
Low | No | 2207 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -29.869 AMFE: -0.655 GC content %: 45.628 | |
| Taestivum_Traes_3DL_BCBE7B2E2.27 Traes_3DL_BCBE7B2E2.27 PAC:31888885 |
High | No | 1338 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -28.602 AMFE: -0.619 GC content %: 46.188 | |
| Taestivum_Traes_3DL_BCBE7B2E2.28 Traes_3DL_BCBE7B2E2.28 PAC:31888888 |
Low | No | 1826 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -31.802 AMFE: -0.652 GC content %: 48.740 | |
| Taestivum_Traes_3DL_BCBE7B2E2.29 Traes_3DL_BCBE7B2E2.29 PAC:31888887 |
Low | No | 4121 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -26.455 AMFE: -0.658 GC content %: 40.209 | |
| Taestivum_Traes_3DL_BCBE7B2E2.3 Traes_3DL_BCBE7B2E2.3 PAC:31888861 |
Low | No | 2736 | Get ORF Coding potential... Type: noncoding Potential: -1.189 Folding energies... MFEI: -31.466 AMFE: -0.724 GC content %: 43.458 | |
| Taestivum_Traes_3DL_BCBE7B2E2.30 Traes_3DL_BCBE7B2E2.30 PAC:31888889 |
Low | No | 3959 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -27.823 AMFE: -0.666 GC content %: 41.753 | |
| Taestivum_Traes_3DL_BCBE7B2E2.31 Traes_3DL_BCBE7B2E2.31 PAC:31888890 |
Low | No | 1854 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -31.645 AMFE: -0.652 GC content %: 48.544 | |
| Taestivum_Traes_3DL_BCBE7B2E2.32 Traes_3DL_BCBE7B2E2.32 PAC:31888891 |
Low | No | 1749 | Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -30.835 AMFE: -0.656 GC content %: 46.998 | |
| Taestivum_Traes_3DL_BCBE7B2E2.33 Traes_3DL_BCBE7B2E2.33 PAC:31888892 |
High | No | 4286 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -27.858 AMFE: -0.708 GC content %: 39.361 | |
| Taestivum_Traes_3DL_BCBE7B2E2.34 Traes_3DL_BCBE7B2E2.34 PAC:31888893 |
High | No | 3007 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -30.093 AMFE: -0.720 GC content %: 41.802 | |
| Taestivum_Traes_3DL_BCBE7B2E2.35 Traes_3DL_BCBE7B2E2.35 PAC:31888894 |
Low | No | 1946 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -29.943 AMFE: -0.647 GC content %: 46.300 | |
| Taestivum_Traes_3DL_BCBE7B2E2.4 Traes_3DL_BCBE7B2E2.4 PAC:31888860 |
Low | No | 1588 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -32.393 AMFE: -0.646 GC content %: 50.126 | |
| Taestivum_Traes_3DL_BCBE7B2E2.5 Traes_3DL_BCBE7B2E2.5 PAC:31888864 |
Low | No | 2064 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -30.736 AMFE: -0.655 GC content %: 46.948 | |
| Taestivum_Traes_3DL_BCBE7B2E2.6 Traes_3DL_BCBE7B2E2.6 PAC:31888877 |
Low | No | 1819 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -31.968 AMFE: -0.650 GC content %: 49.148 | |
| Taestivum_Traes_3DL_BCBE7B2E2.7 Traes_3DL_BCBE7B2E2.7 PAC:31888871 |
Low | No | 1823 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -31.766 AMFE: -0.648 GC content %: 48.985 | |
| Taestivum_Traes_3DL_BCBE7B2E2.8 Traes_3DL_BCBE7B2E2.8 PAC:31888872 |
Low | No | 3237 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -28.171 AMFE: -0.660 GC content %: 42.694 | |
| Taestivum_Traes_3DL_BCBE7B2E2.9 Traes_3DL_BCBE7B2E2.9 PAC:31888875 |
Low | No | 3237 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -27.875 AMFE: -0.654 GC content %: 42.601 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
