GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_C3F9A3367 Traes_3DL_C3F9A3367	ta_iwgsc_3dl_v1_6889800	187	4953	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_C3F9A3367.6 Traes_3DL_C3F9A3367.6 PAC:31751204	High	No	698		Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -24.570 AMFE: -0.610 GC content %: 40.258
Taestivum_Traes_3DL_C3F9A3367.7 Traes_3DL_C3F9A3367.7 PAC:31751205	High	No	300		Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -23.000 AMFE: -0.519 GC content %: 44.333

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).