Gene
Taestivum Traes 3DL EFFA73895
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_EFFA73895 Traes_3DL_EFFA73895 |
ta_iwgsc_3dl_v1_6921701 | 2967 | 9661 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_EFFA73895.5 Traes_3DL_EFFA73895.5 PAC:31801665 |
Low | No | 1180 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -23.712 AMFE: -0.607 GC content %: 39.068 | |
| Taestivum_Traes_3DL_EFFA73895.6 Traes_3DL_EFFA73895.6 PAC:31801666 |
Low | No | 2112 | Get ORF Coding potential... Type: noncoding Potential: -0.146 Folding energies... MFEI: -26.619 AMFE: -0.650 GC content %: 40.956 | |
| Taestivum_Traes_3DL_EFFA73895.7 Traes_3DL_EFFA73895.7 PAC:31801667 |
Low | No | 2558 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -27.279 AMFE: -0.664 GC content %: 41.087 | |
| Taestivum_Traes_3DL_EFFA73895.8 Traes_3DL_EFFA73895.8 PAC:31801668 |
High | No | 325 | Get ORF Coding potential... Type: noncoding Potential: -1.396 Folding energies... MFEI: -30.892 AMFE: -0.612 GC content %: 50.462 | |
| Taestivum_Traes_3DL_EFFA73895.9 Traes_3DL_EFFA73895.9 PAC:31801669 |
High | No | 1057 | Get ORF Coding potential... Type: noncoding Potential: -1.311 Folding energies... MFEI: -24.711 AMFE: -0.686 GC content %: 36.045 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
