Gene
Taestivum Traes 3DL F309133641
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DL_F309133641 Traes_3DL_F309133641 |
ta_iwgsc_3dl_v1_6918041 | 1214 | 2459 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DL_F309133641.1 Traes_3DL_F309133641.1 PAC:31740049 |
High | No | 437 | Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -24.142 AMFE: -0.502 GC content %: 48.055 | |
| Taestivum_Traes_3DL_F309133641.2 Traes_3DL_F309133641.2 PAC:31740046 |
High | No | 341 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -20.909 AMFE: -0.427 GC content %: 48.974 | |
| Taestivum_Traes_3DL_F309133641.3 Traes_3DL_F309133641.3 PAC:31740047 |
High | No | 465 | Get ORF Coding potential... Type: noncoding Potential: -0.659 Folding energies... MFEI: -26.452 AMFE: -0.554 GC content %: 47.742 | |
| Taestivum_Traes_3DL_F309133641.4 Traes_3DL_F309133641.4 PAC:31740050 |
High | No | 295 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -21.525 AMFE: -0.429 GC content %: 50.169 | |
| Taestivum_Traes_3DL_F309133641.5 Traes_3DL_F309133641.5 PAC:31740051 |
High | No | 228 | Get ORF Coding potential... Type: noncoding Potential: -0.530 Folding energies... MFEI: -21.535 AMFE: -0.450 GC content %: 47.807 | |
| Taestivum_Traes_3DL_F309133641.6 Traes_3DL_F309133641.6 PAC:31740048 |
High | No | 700 | Get ORF Coding potential... Type: noncoding Potential: -0.776 Folding energies... MFEI: -26.286 AMFE: -0.613 GC content %: 42.857 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
