GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DL_FFEDC8D38 Traes_3DL_FFEDC8D38	ta_iwgsc_3dl_v1_6954022	1	4757	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DL_FFEDC8D38.10 Traes_3DL_FFEDC8D38.10 PAC:31930559	Low	No	1223		Get ORF Coding potential... Type: noncoding Potential: -0.052 Folding energies... MFEI: -26.247 AMFE: -0.639 GC content %: 41.047
Taestivum_Traes_3DL_FFEDC8D38.8 Traes_3DL_FFEDC8D38.8 PAC:31930557	Low	No	454		Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -23.370 AMFE: -0.583 GC content %: 40.088
Taestivum_Traes_3DL_FFEDC8D38.9 Traes_3DL_FFEDC8D38.9 PAC:31930558	Low	No	449		Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -22.984 AMFE: -0.573 GC content %: 40.089

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).