GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_051098EFB Traes_3DS_051098EFB	ta_iwgsc_3ds_v1_1342169	186	2464	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_051098EFB.2 Traes_3DS_051098EFB.2 PAC:31791134	High	No	728		Get ORF Coding potential... Type: noncoding Potential: -0.948 Folding energies... MFEI: -25.577 AMFE: -0.651 GC content %: 39.286
Taestivum_Traes_3DS_051098EFB.3 Traes_3DS_051098EFB.3 PAC:31791135	High	No	859		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -27.939 AMFE: -0.661 GC content %: 42.258

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).