Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_3DS_1A6E1A221 Traes_3DS_1A6E1A221 |
ta_iwgsc_3ds_v1_2598963 | 2760 | 3055 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_3DS_1A6E1A221.1 Traes_3DS_1A6E1A221.1 PAC:32009197 |
Low | No | 243 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -35.761 AMFE: -0.658 GC content %: 54.321 | |
Taestivum_Traes_3DS_1A6E1A221.2 Traes_3DS_1A6E1A221.2 PAC:32009198 |
Low | No | 224 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -30.714 AMFE: -0.555 GC content %: 55.357 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_3DS_1A6E1A221.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE-4_OS | |
Taestivum_Traes_3DS_1A6E1A221.2 | RepBase (RepeatMasker) | 2014-01-31 | LINE-4_OS |