GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_2F2FB99B9 Traes_3DS_2F2FB99B9	ta_iwgsc_3ds_v1_2600491	15	2354	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_2F2FB99B9.1 Traes_3DS_2F2FB99B9.1 PAC:31968497	Low	No	754		Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -24.456 AMFE: -0.595 GC content %: 41.114
Taestivum_Traes_3DS_2F2FB99B9.2 Traes_3DS_2F2FB99B9.2 PAC:31968494	Low	No	1976		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -25.005 AMFE: -0.649 GC content %: 38.512
Taestivum_Traes_3DS_2F2FB99B9.3 Traes_3DS_2F2FB99B9.3 PAC:31968495	Low	No	2025		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.358 AMFE: -0.657 GC content %: 38.617
Taestivum_Traes_3DS_2F2FB99B9.4 Traes_3DS_2F2FB99B9.4 PAC:31968496	Low	No	1542		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -25.220 AMFE: -0.653 GC content %: 38.651

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).