GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_2F5F2C276 Traes_3DS_2F5F2C276	ta_iwgsc_3ds_v1_1967793	1	789	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_2F5F2C276.1 Traes_3DS_2F5F2C276.1 PAC:31992391	High	No	388		Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -23.093 AMFE: -0.527 GC content %: 43.814
Taestivum_Traes_3DS_2F5F2C276.2 Traes_3DS_2F5F2C276.2 PAC:31992392	High	No	784		Get ORF Coding potential... Type: noncoding Potential: -1.224 Folding energies... MFEI: -23.355 AMFE: -0.587 GC content %: 39.796

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).