GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_3AABB0A7B Traes_3DS_3AABB0A7B	ta_iwgsc_3ds_v1_1745094	1	468	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_3AABB0A7B.1 Traes_3DS_3AABB0A7B.1 PAC:31767266	Low	No	374		Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -30.775 AMFE: -0.584 GC content %: 52.674
Taestivum_Traes_3DS_3AABB0A7B.2 Traes_3DS_3AABB0A7B.2 PAC:31767267	Low	No	372		Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -30.941 AMFE: -0.584 GC content %: 52.957

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).