Gene
Taestivum Traes 3DS 428B9F56B
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_3DS_428B9F56B Traes_3DS_428B9F56B |
ta_iwgsc_3ds_v1_2576044 | 23 | 4228 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_3DS_428B9F56B.1 Traes_3DS_428B9F56B.1 PAC:31767938 |
High | No | 1679 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -24.032 AMFE: -0.610 GC content %: 39.369 | |
| Taestivum_Traes_3DS_428B9F56B.12 Traes_3DS_428B9F56B.12 PAC:31767933 |
High | No | 1472 | Get ORF Coding potential... Type: noncoding Potential: -1.096 Folding energies... MFEI: -24.552 AMFE: -0.605 GC content %: 40.557 | |
| Taestivum_Traes_3DS_428B9F56B.13 Traes_3DS_428B9F56B.13 PAC:31767934 |
High | No | 2267 | Get ORF Coding potential... Type: noncoding Potential: -1.134 Folding energies... MFEI: -25.104 AMFE: -0.627 GC content %: 40.053 | |
| Taestivum_Traes_3DS_428B9F56B.14 Traes_3DS_428B9F56B.14 PAC:31767937 |
High | No | 1320 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -24.780 AMFE: -0.600 GC content %: 41.288 | |
| Taestivum_Traes_3DS_428B9F56B.15 Traes_3DS_428B9F56B.15 PAC:31767935 |
High | No | 1374 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -26.004 AMFE: -0.618 GC content %: 42.067 | |
| Taestivum_Traes_3DS_428B9F56B.16 Traes_3DS_428B9F56B.16 PAC:31767936 |
High | No | 1469 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -23.676 AMFE: -0.617 GC content %: 38.393 | |
| Taestivum_Traes_3DS_428B9F56B.17 Traes_3DS_428B9F56B.17 PAC:31767939 |
High | No | 1485 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -24.889 AMFE: -0.606 GC content %: 41.077 | |
| Taestivum_Traes_3DS_428B9F56B.18 Traes_3DS_428B9F56B.18 PAC:31767940 |
High | No | 1559 | Get ORF Coding potential... Type: noncoding Potential: -1.102 Folding energies... MFEI: -25.362 AMFE: -0.618 GC content %: 41.052 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
