GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_760A3B190 Traes_3DS_760A3B190	ta_iwgsc_3ds_v1_2551427	142	1312	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_760A3B190.1 Traes_3DS_760A3B190.1 PAC:32021797	Low	No	717		Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -26.709 AMFE: -0.663 GC content %: 40.307
Taestivum_Traes_3DS_760A3B190.2 Traes_3DS_760A3B190.2 PAC:32021798	Low	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.694 Folding energies... MFEI: -28.797 AMFE: -0.626 GC content %: 45.989

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).