GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_E206759291 Traes_3DS_E206759291	ta_iwgsc_3ds_v1_1387442	1	376	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_E206759291.1 Traes_3DS_E206759291.1 PAC:31901794	High	No	376		Get ORF Coding potential... Type: noncoding Potential: -0.877 Folding energies... MFEI: -25.559 AMFE: -0.586 GC content %: 43.617
Taestivum_Traes_3DS_E206759291.2 Traes_3DS_E206759291.2 PAC:31901795	High	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -25.695 AMFE: -0.590 GC content %: 43.583

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).