GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_3DS_EBD96FE73 Traes_3DS_EBD96FE73	ta_iwgsc_3ds_v1_1800712	306	750	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_3DS_EBD96FE73.1 Traes_3DS_EBD96FE73.1 PAC:31935723	High	No	204		Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -31.569 AMFE: -0.613 GC content %: 51.471
Taestivum_Traes_3DS_EBD96FE73.2 Traes_3DS_EBD96FE73.2 PAC:31935724	High	No	436		Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -28.624 AMFE: -0.657 GC content %: 43.578

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).