GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_0171E1360 Traes_4AL_0171E1360	ta_iwgsc_4al_v2_6570331	199	2520	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_0171E1360.1 Traes_4AL_0171E1360.1 PAC:31939071	High	No	793		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -21.387 AMFE: -0.556 GC content %: 38.462
Taestivum_Traes_4AL_0171E1360.2 Traes_4AL_0171E1360.2 PAC:31939070	High	No	966		Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -22.733 AMFE: -0.602 GC content %: 37.785

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).