GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_0CCA685F3 Traes_4AL_0CCA685F3	ta_iwgsc_4al_v2_7076763	4	2141	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_0CCA685F3.1 Traes_4AL_0CCA685F3.1 PAC:31881665	Low	No	816		Get ORF Coding potential... Type: noncoding Potential: -0.268 Folding energies... MFEI: -32.917 AMFE: -0.557 GC content %: 59.069
Taestivum_Traes_4AL_0CCA685F3.2 Traes_4AL_0CCA685F3.2 PAC:31881666	Low	No	461		Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -22.733 AMFE: -0.606 GC content %: 37.527

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).